{"id":42608,"date":"2026-09-15T13:27:33","date_gmt":"2026-09-15T11:27:33","guid":{"rendered":"https:\/\/www.graviton.at\/letterswaplibrary\/microscopy-image-dataset-of-pulmonary-vessels-for-quantitative-assessment-of-fibrosis\/"},"modified":"2026-09-15T13:27:33","modified_gmt":"2026-09-15T11:27:33","slug":"microscopy-image-dataset-of-pulmonary-vessels-for-quantitative-assessment-of-fibrosis","status":"publish","type":"post","link":"https:\/\/www.graviton.at\/letterswaplibrary\/microscopy-image-dataset-of-pulmonary-vessels-for-quantitative-assessment-of-fibrosis\/","title":{"rendered":"Microscopy Image Dataset Of Pulmonary Vessels For Quantitative Assessment Of Fibrosis"},"content":{"rendered":"<p><!-- SC_OFF --><\/p>\n<div class=\"md\">\n<p><strong>Disclosure:<\/strong> We created and published this dataset.<\/p>\n<p>New Open-Access Benchmark: Hierarchical segmentation of vascular fibrosis in computational pathology.<\/p>\n<p><strong>The Core Challenge:<\/strong><br \/> Segmenting the vascular wall is well-defined (baseline UNet DSC \u2248 0.80; inter-expert DSC \u2248 0.95). However, segmenting the intramural fibrotic microstructure remains an open problem. Due to its diffuse and heterogeneous nature, our baseline MONAI UNet achieves a DSC of only ~0.12 on fibrosis, while human inter-expert agreement averages ~0.61 DSC. <\/p>\n<p><strong>Dataset Specifications:<\/strong><br \/> \ud83d\udd2c Scale: 705 high-resolution micrographs (1534\u00d7780 px, 0.252 \u03bcm\/px), Picro-Mallory stain.<br \/> \ud83c\udff7\ufe0f Annotations: ROI + dual independent expert masks (vascular wall + fibrosis).<br \/> \u26a0\ufe0f Hierarchical Constraint: Fibrosis masks must be strictly spatially contained within the vascular wall.<br \/> \ud83d\udee1\ufe0f Robust Benchmarking: No color normalization applied; native aspect ratios preserved; strict animal-level 5-fold CV splits provided to prevent data leakage.<\/p>\n<p>\ud83d\udcc4 Read the Data Descriptor: <a href=\"https:\/\/doi.org\/10.1038\/s41597-026-08214-y\">https:\/\/doi.org\/10.1038\/s41597-026-08214-y<\/a><br \/> \ud83d\uddc2\ufe0f Access the Dataset: <a href=\"https:\/\/doi.org\/10.6084\/m9.figshare.31386748\">https:\/\/doi.org\/10.6084\/m9.figshare.31386748<\/a><\/p>\n<\/div>\n<p><!-- SC_ON -->   submitted by   <a href=\"https:\/\/www.reddit.com\/user\/Logical-Internet-395\"> \/u\/Logical-Internet-395 <\/a> <br \/> <span><a href=\"https:\/\/www.reddit.com\/r\/datasets\/comments\/1wgxnu4\/microscopy_image_dataset_of_pulmonary_vessels_for\/\">[link]<\/a><\/span>   <span><a href=\"https:\/\/www.reddit.com\/r\/datasets\/comments\/1wgxnu4\/microscopy_image_dataset_of_pulmonary_vessels_for\/\">[comments]<\/a><\/span><\/p><div class='watch-action'><div class='watch-position align-right'><div class='action-like'><a class='lbg-style1 like-42608 jlk' href='javascript:void(0)' data-task='like' data-post_id='42608' data-nonce='6d7729fa36' rel='nofollow'><img class='wti-pixel' src='https:\/\/www.graviton.at\/letterswaplibrary\/wp-content\/plugins\/wti-like-post\/images\/pixel.gif' title='Like' \/><span class='lc-42608 lc'>0<\/span><\/a><\/div><\/div> <div class='status-42608 status align-right'><\/div><\/div><div class='wti-clear'><\/div>","protected":false},"excerpt":{"rendered":"<p>Disclosure: We created and published this dataset. New Open-Access Benchmark: Hierarchical segmentation of vascular fibrosis in computational&#8230;<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[85],"tags":[],"class_list":["post-42608","post","type-post","status-publish","format-standard","hentry","category-datatards","wpcat-85-id"],"_links":{"self":[{"href":"https:\/\/www.graviton.at\/letterswaplibrary\/wp-json\/wp\/v2\/posts\/42608","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.graviton.at\/letterswaplibrary\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.graviton.at\/letterswaplibrary\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.graviton.at\/letterswaplibrary\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.graviton.at\/letterswaplibrary\/wp-json\/wp\/v2\/comments?post=42608"}],"version-history":[{"count":0,"href":"https:\/\/www.graviton.at\/letterswaplibrary\/wp-json\/wp\/v2\/posts\/42608\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.graviton.at\/letterswaplibrary\/wp-json\/wp\/v2\/media?parent=42608"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.graviton.at\/letterswaplibrary\/wp-json\/wp\/v2\/categories?post=42608"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.graviton.at\/letterswaplibrary\/wp-json\/wp\/v2\/tags?post=42608"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}